Bioinformatics and Computational Biology



I am interested in applications of mathematics and computer science to biology in order to understand the basic rules of the huge unverse within a cell.
 


Research projects (after 2003)


  1. Tnf-alpha regulation model (Hoffmann) sensitivity analysis (with S. Ihara, Tokyo University).

  2. Huvec cells microarray data analysis (with S. Ihara, Tokyo University).

  3. Genetic toggle switch (with S. Ohgiya, AIST).

  4. Predicting the 3D structure of Cipridina Noctiluca luciferase (with S. Ohgiya, AIST).

  5. Ciona intestinalis development microarray data analysis (with K. Azumi, Hokkaido University and my student K. Kanda).

  6. Ciona intestinalis DB (with K. Azumi, Hokkaido University and my student T. Yasuda), acces restricted.
 
  7. Data base for Ciona intestinalis spread situation in Japan (with K. Azumi, Hokkaido University and my student S. Kimura).

  8. Analysis of metabolic syndrom factors (with S. Ioacara, Institute N.C. Paulescu).

  9. Analysis of mortality in diabetes patients (with S. Ioacara, Institute N.C. Paulescu).

 10. Chlamidomonas microarray data analysis (with AIST), in work.

 11. Artificial pancreas (with S. Ioacara, Institute N.C. Paulescu), in work.




Links

Virtual Cell
PubMed
PNAS
Statistics (only Japanese)
Pacific Symposium on Bioinformatics
Genome Glossary
Molecular Biology Notebook
KEGG Metabolic Pathways
NIH
Human Genome Center (Tokyo)


Related Software

XGobi
GenScan
DDLab